Script
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Auto Hatchery - pokeclicker.com JS - Automatically hatches eggs at 100% completion. Then uses the sorting and filters from the Hatcher to fill it with the best remaining Pokémon.
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Bomb Underground when Energy full - pokeclicker.com JS - Automatically use Bomb when the next energy tick will put you at max energy or above. Use it or lose it! This is horribly horribly inefficient, but it's better than wasting energy.