I was also having this problem but I found a rigged fix until the developer officially fixes it. Go into the coding and look for "// Add UI buttons."
A few lines below that you should see
"'<div style="font-size:x-small;position: absolute;right: 22%"
Changing the 22% to 60% will move the menu to the right and out of the way of the real menu. I am in no way shape or form a coder but after looking at the code a little this worked for me. Hopes this helps you guys